See configure file
enabled jni && { [ $target_os = "android" ] && check_header jni.h && enabled pthreads &&
check_lib "dlfcn.h" dlopen -ldl || die "ERROR: jni not found"; }
You can see target_os must android.
#!/bin/bash
NDK=~/android-ndk-r14b/
SYSROOT=$NDK/platforms/android-14/arch-arm/
TOOLCHAIN=$NDK/toolchains/arm-linux-androideabi-4.9/prebuilt/linux-x86_64
CPU=armv7-a
PREFIX=$(pwd)/$CPU
ADDI_CFLAGS="-marm -march=$CPU"
./configure \
--prefix=$PREFIX \
--enable-static \
--disable-shared \
--disable-ffserver \
--disable-ffmpeg \
--disable-ffplay \
--disable-ffprobe \
--disable-doc \
--disable-symver \
--enable-small \
--enable-gpl \
--enable-asm \
--enable-jni \
--enable-mediacodec \
--enable-decoder=h264_mediacodec \
--enable-hwaccel=h264_mediacodec \
--enable-decoder=hevc_mediacodec \
--enable-decoder=mpeg4_mediacodec \
--enable-decoder=vp8_mediacodec \
--enable-decoder=vp9_mediacodec \
--enable-nonfree \
--enable-version3 \
--cross-prefix=$TOOLCHAIN/bin/arm-linux-androideabi- \
--target-os=android \
--arch=arm \
--sysroot=$SYSROOT \
--extra-cflags="-Os -fpic $ADDI_CFLAGS" \
--extra-ldflags="$ADDI_LDFLAGS" \
$ADDITIONAL_CONFIGURE_FLAG